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OrientDB has the flexibility of the Document databases and the power of the Graph databases to manage relationships. It can work in schema-less mode, schema-full or a mix of both. It can store up to 150,000 records per second on common hardware. OrientDB has been designed to be very fast. It inherits the best features and concepts from the Object Databases, Graph DBMS and the modern NoSQL engines.
HyperGraphDB is a general purpose, open-source data storage mechanism based on a powerful knowledge management formalism known as directed hypergraphs. While a persistent memory model designed mostly for Knowledge management, Artificial Intelligence and Semantic web projects, it can also be used as an embedded object-oriented database for Java projects of all sizes. It could also be used as graph database or as (non-SQL) relational database.
Neo4j is a high-performance graph engine with all the features of a mature and robust database. It is a graph database, storing data in the nodes and relationships of a graph. It includes the usual database features like ACID transactions, durable persistence, concurrency control, transaction recovery, high availability.